All pages
Jump to navigation
Jump to search
- 2Aug06teleconf
- APE incomplete distance extension
- Agenda
- Background
- BioPerlTargets
- BioRuby PhyloXML HowTo documentation
- Categories
- CharacterModel Object Model
- Cyberinfrastructure Summer Traineeships 2009
- Cyberinfrastructure Summer Traineeships 2009/Summaries
- Distances 1
- Distances 10
- Distances 2
- Distances 3
- Distances 4
- Distances 5
- Distances 6
- Distances 7
- Distances 8
- Distances 9
- Documents
- Ecophylodemo
- Estimate Divergence Documentation
- Family Alignment Documentation
- First Call For Suggestions
- Forum
- GSoC2013 Coding Challenge
- Hackathon Information
- Hackathon Whitepaper Guidelines
- Implementation of PDSIMUL for Mesquite
- Information
- Integrating RNA web services in Jalview using JABAWS
- Jason Stajich
- List of potential Jalview projects
- MTHTemplate:Cite journal
- Main Page
- Morphological Characters Documentation
- NEXUS Specification
- NameIssue
- Naming table
- NeXML Elements
- NeXML and RDF API for BioRuby
- NeXML to ISAtab Mapping
- NeXML to ISAtab Mapping v0.1
- NeXML to ISAtab Mapping v0.2
- NonConformantWorkspace
- Participants
- PhySoC 2007: Command Line Topological Query Application for BioSQL
- PhyloSoC:An Extension of Mesquite based on PDSIMUL
- PhyloSoC:Ancestral State Reconstruction in R
- PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit
- PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/Benchmark Results
- PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/HOWTO
- PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/alignIO attribute mapping
- PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/nexml module design
- PhyloSoC:Biodiversity Conservation Algorithms and GUI
- PhyloSoC:Biopython support for parsing and writing phyloXML
- PhyloSoC:Browser-based animations for phylogeography
- PhyloSoC:Build a Mesquite Package to view Phenex-generated Nexml files
- PhyloSoC:Command Line Topological Query Application for BioSQL
- PhyloSoC:Enhance the searching functionality of Phylr
- PhyloSoC:Enhancing the representation of ecophylogenetic tools in R
- PhyloSoC:Estimation of divergence time priors from fossil occurrence data
- PhyloSoC:Export ontology-based phenotype descriptions to EOL
- PhyloSoC:Extend the Nexus Class Library to parse NeXML and PhyloXML
- PhyloSoC:Extending Jalview to Support RNA Alignment Annotation and Secondary Structure Visualization
- PhyloSoC:Galaxy phylogenetics pipeline development
- PhyloSoC:Geo-referencing library implemented in Java
- PhyloSoC:Mapping the Bio++ Phylogenetics toolkit to R/BioConductor and BioJAVA using BioLib
- PhyloSoC:Matrix display of phenotype annotations using ontologies in Phenote
- PhyloSoC:Multi-language bindings to the NEXUS Class Library
- PhyloSoC:PhyloXML support in BioRuby
- PhyloSoC:Phylogenetic XML
- PhyloSoC:Phylogenetic and Haplotype Displays for GBrowse
- PhyloSoC:Tree and data plotting demonstration
- PhyloSoC:Tree and data plotting in the phylobase project
- PhyloSoC: Apply Machine Learning Algorithm(s) to Ecology Data
- PhyloSoC: Automated submission of rich data to TreeBASE
- PhyloSoC: DIM SUM 2 GPU computing for individual based simulator of movement and demography
- PhyloSoC: Extending Jalview support for handling RNA
- PhyloSoC: Integrating RNA web services in Jalview using JABAWS
- PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes
- PhyloSoC: Interoperable exchange of gene tree reconciliation maps
- PhyloSoC: Manipulating NGS data for population genetic analysis
- PhyloSoC: NeXML to MIAPA mapping
- PhyloSoC: PhyloGeoRef Java library for mapping phylogenetic trees in KML
- PhyloSoC: Summary and visualization of phylogenetic tree sets
- PhyloSoC:geoRef
- PhyloSoC:phyexport
- PhyloSoC:phyimport
- PhyloSoC:phyinit
- PhyloSoC:phyloGeoRef
- PhyloSoC:phylogeoviz
- PhyloSoC:phymod
- PhyloSoC:phyopt
- PhyloSoC:phyreport
- PhyloSoC 2009/Participants
- Phylobase Hackathon
- Phylogenetic Footprinting Documentation
- Phylogenetic footprinting
- Phylohackathon 1
- Phylohackathon 1/Agenda
- Phylohackathon 1/BioPerl Targets
- Phylohackathon 1/Documentation
- Phylohackathon 1/First Call For Suggestions
- Phylohackathon 1/Participants
- Phylohackathon 1/Planning Steps
- Phylohackathon 1/Proposal
- Phylohackathon 1/Subgroup Proposals
- Phylohackathon 1/Targets
- Phylohackathon 1/Teleconferences
- Phyloinformatics Documentation
- Phyloinformatics Summer of Code 2007
- Phyloinformatics Summer of Code 2008
- Phyloinformatics Summer of Code 2008/ecophylodemo
- Phyloinformatics Summer of Code 2009
- Phyloinformatics Summer of Code 2009/Participants
- Phyloinformatics Summer of Code 2009/Summaries
- Phyloinformatics Summer of Code 2010
- Phyloinformatics Summer of Code 2010/Summaries
- Phyloinformatics Summer of Code 2011
- Phyloinformatics Summer of Code 2011/Summaries
- Phyloinformatics Summer of Code 2012
- Phyloinformatics Summer of Code 2012/Summaries
- Phyloinformatics Summer of Code 2013
- Phyloinformatics Summer of Code 2013/Summaries
- Phyloinformatics Summer of Code 2014
- Phyloinformatics Summer of Code Mentors
- Project Plan for NeXML and RDF API in BioRuby
- Proposal
- Public:CharacterModelObjectModel
- Public:Test
- Public:UseCases
- Public:Use Cases
- Public:Use Cases1
- R Hackathon
- R Hackathon/Ancestral State Reconstruction
- R Hackathon/Basics
- R Hackathon/ContinuousData
- R Hackathon/CorrelatedDiscrete
- R Hackathon/DataTreeManipulation
- R Hackathon/Divergence Time Estimation
- R Hackathon/Diversification
- R Hackathon/GettingStarted
- R Hackathon/InputtingData
- R Hackathon/InputtingTrees
- R Hackathon/Mesquite In R
- R Hackathon/PGLS
- R Hackathon/PhylogeneticIndependentContrasts
- R Hackathon/TransitionProbability
- R Hackathon/UsingVignettes
- R Hackathon1/HelpWiki
- R Hackathon1/Taskview
- R Hackathon 1
- R Hackathon 1/Ancestral State Reconstruction
- R Hackathon 1/Basics
- R Hackathon 1/Call for End-user Participation
- R Hackathon 1/Call for Participation
- R Hackathon 1/Class Design SG
- R Hackathon 1/CodeTidbits
- R Hackathon 1/ContinuousData
- R Hackathon 1/Contributors
- R Hackathon 1/CorrelatedDiscrete
- R Hackathon 1/Current Data Representations
- R Hackathon 1/DataTreeManipulation
- R Hackathon 1/Data Standards
- R Hackathon 1/Discussion notes
- R Hackathon 1/Divergence Time Estimation
- R Hackathon 1/Divergence Time Estimation SG
- R Hackathon 1/Diversification
- R Hackathon 1/Diversification SG
- R Hackathon 1/Documentation
- R Hackathon 1/Documentation SG
- R Hackathon 1/End User Goals
- R Hackathon 1/GettingStarted
- R Hackathon 1/HelpWiki
- R Hackathon 1/Input-Output SG
- R Hackathon 1/InputOutput
- R Hackathon 1/InputtingData
- R Hackathon 1/InputtingTrees
- R Hackathon 1/Mesquite-R Integration SG
- R Hackathon 1/Mesquite-R communication SG
- R Hackathon 1/Mesquite In R
- R Hackathon 1/PGLS
- R Hackathon 1/Package Overviews
- R Hackathon 1/Participants
- R Hackathon 1/Phylo4
- R Hackathon 1/Phylobase
- R Hackathon 1/Phylogenetic Independent Contrasts
- R Hackathon 1/Planning Steps
- R Hackathon 1/Programming Goals
- R Hackathon 1/Proposal
- R Hackathon 1/R Vignette HowTo
- R Hackathon 1/Schedule
- R Hackathon 1/Source Code Management
- R Hackathon 1/Subgroups
- R Hackathon 1/Targets and Accomplishments
- R Hackathon 1/Taskview
- R Hackathon 1/Teleconferences
- R Hackathon 1/Trait Evolution SG
- R Hackathon 1/TransitionProbability
- R Hackathon 1/UsingVignettes
- R Hackathon 1 documentation
- R Hackathon 1 howto
- R Hackathon 1 howto basics
- R Hackathon 2
- R PopGen Hackathon
- Reconcile Trees Documentation
- Reverse Phone Lookup
- Sandbox
- Supporting NEXUS
- Supporting NEXUS Documentation
- Targets
- Teleconferences
- Test
- TreeReconciliation
- UseCases
- Use Cases
- WG:Participants
- Writing a Phyloinformatics Project Idea