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2Aug06teleconfAPE incomplete distance extensionAgenda
Background
BioPerlTargets
BioRuby PhyloXML HowTo documentation
CategoriesCharacterModel Object ModelCyberinfrastructure Summer Traineeships 2009
Cyberinfrastructure Summer Traineeships 2009/SummariesDistances 1Distances 10
Distances 2Distances 3Distances 4
Distances 5Distances 6Distances 7
Distances 8Distances 9Documents
EcophylodemoEstimate Divergence DocumentationFamily Alignment Documentation
First Call For Suggestions
ForumGSoC2013 Coding Challenge
Hackathon InformationHackathon Whitepaper GuidelinesImplementation of PDSIMUL for Mesquite
InformationIntegrating RNA web services in Jalview using JABAWS
Jason Stajich
List of potential Jalview projectsMTHTemplate:Cite journalMain Page
Morphological Characters DocumentationNEXUS SpecificationNameIssue
Naming tableNeXML ElementsNeXML and RDF API for BioRuby
NeXML to ISAtab MappingNeXML to ISAtab Mapping v0.1NeXML to ISAtab Mapping v0.2
NonConformantWorkspaceOpenIDParticipants
PhySoC 2007: Command Line Topological Query Application for BioSQL
PhyloSoC:An Extension of Mesquite based on PDSIMULPhyloSoC:Ancestral State Reconstruction in R
PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkitPhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/Benchmark ResultsPhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/HOWTO
PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/alignIO attribute mappingPhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/nexml module designPhyloSoC:Biodiversity Conservation Algorithms and GUI
PhyloSoC:Biopython support for parsing and writing phyloXMLPhyloSoC:Browser-based animations for phylogeographyPhyloSoC:Build a Mesquite Package to view Phenex-generated Nexml files
PhyloSoC:Command Line Topological Query Application for BioSQLPhyloSoC:Enhance the searching functionality of PhylrPhyloSoC:Enhancing the representation of ecophylogenetic tools in R
PhyloSoC:Estimation of divergence time priors from fossil occurrence dataPhyloSoC:Export ontology-based phenotype descriptions to EOLPhyloSoC:Extend the Nexus Class Library to parse NeXML and PhyloXML
PhyloSoC:Extending Jalview to Support RNA Alignment Annotation and Secondary Structure VisualizationPhyloSoC:Galaxy phylogenetics pipeline development
PhyloSoC:Geo-referencing library implemented in Java
PhyloSoC:Mapping the Bio++ Phylogenetics toolkit to R/BioConductor and BioJAVA using BioLibPhyloSoC:Matrix display of phenotype annotations using ontologies in PhenotePhyloSoC:Multi-language bindings to the NEXUS Class Library
PhyloSoC:PhyloXML support in BioRubyPhyloSoC:Phylogenetic XMLPhyloSoC:Phylogenetic and Haplotype Displays for GBrowse
PhyloSoC:Tree and data plotting demonstrationPhyloSoC:Tree and data plotting in the phylobase projectPhyloSoC: Apply Machine Learning Algorithm(s) to Ecology Data
PhyloSoC: Automated submission of rich data to TreeBASEPhyloSoC: DIM SUM 2 GPU computing for individual based simulator of movement and demographyPhyloSoC: Extending Jalview support for handling RNA
PhyloSoC: Integrating RNA web services in Jalview using JABAWSPhyloSoC: Interoperable exchange of gene tree reconciliation map:notesPhyloSoC: Interoperable exchange of gene tree reconciliation maps
PhyloSoC: Manipulating NGS data for population genetic analysisPhyloSoC: NeXML to MIAPA mappingPhyloSoC: PhyloGeoRef Java library for mapping phylogenetic trees in KML
PhyloSoC: Summary and visualization of phylogenetic tree sets
PhyloSoC:geoRef
PhyloSoC:phyexport
PhyloSoC:phyimportPhyloSoC:phyinitPhyloSoC:phyloGeoRef
PhyloSoC:phylogeovizPhyloSoC:phymodPhyloSoC:phyopt
PhyloSoC:phyreport
PhyloSoC 2009/Participants
Phylobase Hackathon
Phylogenetic Footprinting DocumentationPhylogenetic footprintingPhylohackathon 1
Phylohackathon 1/AgendaPhylohackathon 1/BioPerl TargetsPhylohackathon 1/Documentation
Phylohackathon 1/First Call For SuggestionsPhylohackathon 1/ParticipantsPhylohackathon 1/Planning Steps
Phylohackathon 1/ProposalPhylohackathon 1/Subgroup ProposalsPhylohackathon 1/Targets
Phylohackathon 1/Teleconferences
Phyloinformatics Documentation
Phyloinformatics Summer of Code 2007
Phyloinformatics Summer of Code 2008Phyloinformatics Summer of Code 2008/ecophylodemoPhyloinformatics Summer of Code 2009
Phyloinformatics Summer of Code 2009/ParticipantsPhyloinformatics Summer of Code 2009/SummariesPhyloinformatics Summer of Code 2010
Phyloinformatics Summer of Code 2010/SummariesPhyloinformatics Summer of Code 2011Phyloinformatics Summer of Code 2011/Summaries
Phyloinformatics Summer of Code 2012Phyloinformatics Summer of Code 2012/SummariesPhyloinformatics Summer of Code 2013
Phyloinformatics Summer of Code MentorsProject Plan for NeXML and RDF API in BioRubyProposal
R Hackathon
R Hackathon/Ancestral State Reconstruction
R Hackathon/Basics
R Hackathon/ContinuousData
R Hackathon/CorrelatedDiscrete
R Hackathon/DataTreeManipulation
R Hackathon/Divergence Time Estimation
R Hackathon/Diversification
R Hackathon/GettingStarted
R Hackathon/InputtingData
R Hackathon/InputtingTrees
R Hackathon/Mesquite In R
R Hackathon/PGLS
R Hackathon/PhylogeneticIndependentContrasts
R Hackathon/TransitionProbability
R Hackathon/UsingVignettes
R Hackathon1/HelpWiki
R Hackathon1/Taskview
R Hackathon 1R Hackathon 1/Ancestral State ReconstructionR Hackathon 1/Basics
R Hackathon 1/Call for End-user ParticipationR Hackathon 1/Call for ParticipationR Hackathon 1/Class Design SG
R Hackathon 1/CodeTidbitsR Hackathon 1/ContinuousDataR Hackathon 1/Contributors
R Hackathon 1/CorrelatedDiscreteR Hackathon 1/Current Data RepresentationsR Hackathon 1/DataTreeManipulation
R Hackathon 1/Data StandardsR Hackathon 1/Discussion notesR Hackathon 1/Divergence Time Estimation
R Hackathon 1/Divergence Time Estimation SGR Hackathon 1/DiversificationR Hackathon 1/Diversification SG
R Hackathon 1/DocumentationR Hackathon 1/Documentation SGR Hackathon 1/End User Goals
R Hackathon 1/GettingStartedR Hackathon 1/HelpWikiR Hackathon 1/Input-Output SG
R Hackathon 1/InputOutputR Hackathon 1/InputtingDataR Hackathon 1/InputtingTrees
R Hackathon 1/Mesquite-R Integration SG
R Hackathon 1/Mesquite-R communication SG
R Hackathon 1/Mesquite In R
R Hackathon 1/PGLSR Hackathon 1/Package OverviewsR Hackathon 1/Participants
R Hackathon 1/Phylo4
R Hackathon 1/PhylobaseR Hackathon 1/Phylogenetic Independent Contrasts
R Hackathon 1/Planning StepsR Hackathon 1/Programming GoalsR Hackathon 1/Proposal
R Hackathon 1/R Vignette HowToR Hackathon 1/ScheduleR Hackathon 1/Source Code Management
R Hackathon 1/SubgroupsR Hackathon 1/Targets and AccomplishmentsR Hackathon 1/Taskview
R Hackathon 1/TeleconferencesR Hackathon 1/Trait Evolution SGR Hackathon 1/TransitionProbability
R Hackathon 1/UsingVignettes
R Hackathon 1 documentation
R Hackathon 1 howto
R Hackathon 1 howto basics
R Hackathon 2Reconcile Trees Documentation
Reverse Phone LookupSandboxSupporting NEXUS
Supporting NEXUS Documentation
TargetsTeleconferences
TestTreeReconciliationUseCases
Use Cases
Writing a Phyloinformatics Project Idea
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