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  • ...e, name and distance. The goal of this project is to implement support for phyloXML in BioRuby. [[BioRuby PhyloXML HowTo documentation]]
    16 KB (2,498 words) - 23:45, 7 November 2009
  • [http://www.phyloxml.org/ PhyloXML] is an XML format for phylogenetic trees, designed to allow storing informa A Bioperl driver for phyloXML was created during the 2008 Summer of Code; this project aims to build a si
    1 KB (184 words) - 16:22, 23 December 2010
  • ...loXML::Parser and writer in Bio::PhyloXML::Writer. More information at www.phyloxml.org # Create new phyloxml parser
    2 KB (358 words) - 15:21, 14 August 2009
  • PhyloSoC:Extend the Nexus Class Library to parse NeXML and PhyloXML ...d PhyloXML. This project will add the facility to read and write NeXML and PhyloXML formats. In addition, the project will involve designing and implementing a
    3 KB (404 words) - 13:21, 25 May 2010

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  • ..." interchange format, until such a time when a new standard emerges (be it phyloXML or otherwise).
    11 KB (1,762 words) - 11:45, 5 September 2007
  • ...several attempts to create XML formats for phylogenetic data, for example PhyloXML. Several published and unpublished manuscripts take inventory of these, whi ; Involved toolkits or projects : [http://www.phyloxml.org/ PhyloXML], [http://www.bioperl.org BioPerl], [http://search.cpan.org/~rvosa/Bio-Phyl
    33 KB (4,999 words) - 21:12, 22 October 2010
  • ...several attempts to create XML formats for phylogenetic data, for example PhyloXML. Several published and unpublished manuscripts take inventory of these, whi ; Involved toolkits or projects : [http://www.phyloxml.org/ PhyloXML], [http://www.bioperl.org BioPerl], [http://search.cpan.org/~rvosa/Bio-Phyl
    5 KB (705 words) - 15:33, 3 March 2008
  • ...plementations''': create reference implementations for reading and writing PhyloXML format in popular programming languages and toolkits ...': create all missing pieces to enable storing and retrieving NEXUS (''and PhyloXML?'') formatted data to and from, respectively, [http://www.gmod.org/chado Ch
    1 KB (201 words) - 11:04, 5 September 2007
  • # <s>PhyloXML parser+writer.</s> - too much for now.
    16 KB (2,329 words) - 11:27, 5 September 2007
  • :: Chris Zmasek: [[Media:PhyloXML_nh_121206.pdf|PhyloXML format]]
    5 KB (671 words) - 11:54, 5 September 2007
  • ....google.com/soc/2008/nescent/appinfo.html?csaid=8C505179A442C277 SAX based phyloXML support in BioPerl] === This is an application for the [[#phyloXML support in BioPerl|phyloXML support in BioPerl]].
    56 KB (8,424 words) - 21:11, 22 October 2010
  • ...e/gsoc2009/nescent/t124022798969 Biopython support for parsing and writing phyloXML] === ...is an application for a modification of the [[#phyloXML_support_in_BioRuby|phyloXML support in BioRuby]] project idea (namely, choosing Biopython as the Bio* l
    78 KB (11,838 words) - 16:25, 23 December 2010
  • ...e, name and distance. The goal of this project is to implement support for phyloXML in BioRuby. [[BioRuby PhyloXML HowTo documentation]]
    16 KB (2,498 words) - 23:45, 7 November 2009
  • ...&#64;gmail&#46;com] || [[PhyloSoC:PhyloXML_support_in_BioRuby|Implementing phyloXML support in BioRuby]] || [[User:Czmasek|'''Chris Zmasek''']]; [[User:Pjotrp| ...6;talevich&#64;gmail&#46;com] || Biopython support for parsing and writing phyloXML || [[User:Chapmanb|'''Brad Chapman''']]
    2 KB (278 words) - 14:26, 12 March 2010
  • [http://www.phyloxml.org/ PhyloXML] is an XML format for phylogenetic trees, designed to allow storing informa A Bioperl driver for phyloXML was created during the 2008 Summer of Code; this project aims to build a si
    1 KB (184 words) - 16:22, 23 December 2010
  • ...loXML::Parser and writer in Bio::PhyloXML::Writer. More information at www.phyloxml.org # Create new phyloxml parser
    2 KB (358 words) - 15:21, 14 August 2009
  • '''Project:''' Biopython support for parsing and writing phyloXML ...m this if existing libraries and toolkits support this format. To support phyloXML in the bioinformatics programming toolkit [http://biopython.org/wiki/Main_P
    9 KB (1,344 words) - 22:01, 23 September 2009
  • ...l design a set of parser/serializer classes similar to Bio::Nexus and Bio::PhyloXML, and a rich API for representing RDF triples (subject, predicate, object). :* Integrate Biopython's [http://biopython.org/wiki/Phylo PhyloXML support], developed during GSoC 2009, with PyCogent.
    65 KB (9,936 words) - 16:24, 23 December 2010
  • PhyloSoC:Extend the Nexus Class Library to parse NeXML and PhyloXML ...d PhyloXML. This project will add the facility to read and write NeXML and PhyloXML formats. In addition, the project will involve designing and implementing a
    3 KB (404 words) - 13:21, 25 May 2010
  • ...est.shtml TreeBeST] output, e.g. by extension of [http://www.phyloxml.org/ PhyloXML] and its parser in Bio::TreeIO and/or (2) the iPlant GTR database API. :* [http://www.phyloxml.org PhyloXML]
    80 KB (12,076 words) - 07:01, 17 December 2012
  • === Teaching Jalview to work with PhyloXML and NeXML === [http://www.phyloxml.org PhyloXML] and [http://www.nexml.org NeXML] provide new standards for the storage and
    3 KB (400 words) - 09:35, 11 March 2011
  • * PhyloXML: http://www.phyloxml.org/ [[Category:Phyloxml]]
    4 KB (551 words) - 14:18, 22 August 2011
  • == PhyloXML == * [http://www.phyloxml.org/ Homepage]
    2 KB (289 words) - 14:24, 1 June 2011
  • === Extend NCL (the NEXUS Class Library) to parse nexml, phyloxml, and the NOTES block in NEXUS === ; Rationale : nexml and phyloxml are emerging formats for expressing phylogenetic data. The NEXUS Class Lib
    73 KB (11,176 words) - 10:19, 19 September 2012

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