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- ...distance. The goal of this project is to implement support for phyloXML in BioRuby. [[BioRuby PhyloXML HowTo documentation]]16 KB (2,498 words) - 23:45, 7 November 2009
- ...ng and exchanging data of annotated phylogenetic trees. PhyloXML parser in BioRuby is implemented in Bio::PhyloXML::Parser and writer in Bio::PhyloXML::Writer In addition to BioRuby library you need a libxml ruby bindings. To install:2 KB (358 words) - 15:21, 14 August 2009
- ...s page has moved to: https://github.com/rvosa/bio-nexml/wiki/NeXML-API-for-BioRuby [[Category:NeXML and RDF API for BioRuby]]152 bytes (22 words) - 19:06, 22 September 2011
- * Request for feedback from the BioRuby community( this will be done at the end of the week ) * Check out the serializer API in the [[NeXML and RDF API for BioRuby]].4 KB (696 words) - 09:15, 3 July 2010
Page text matches
- ...l is exclusionary to most other programmatic toolkits (BioJava, BioPython, BioRuby, etc.), it is only because of my unawareness of the phyloinformatic support11 KB (1,762 words) - 11:45, 5 September 2007
- ...oke out into toolkit-specific groups (BioPerl, BioJava, BioSQL, BioPython, BioRuby) to carry out a gap analysis. Each group was tasked with identifying opport34 KB (4,831 words) - 16:08, 8 November 2011
- # '''Bioruby''': create object model for phylogenetic trees. Establish interface for exe2 KB (311 words) - 11:15, 26 September 2006
- ...iojava.org BioJava], [http://biopython.org BioPython], [http://bioruby.org BioRuby], ...) have successfully provided a "glue" that allows interoperability of5 KB (605 words) - 17:20, 17 September 2013
- ...r wrappers, such as code for PAUP and T_Coffee, are being developed by the BioRuby group. | created parser for BioRuby.6 KB (869 words) - 17:44, 17 September 2013
- ...ioperl.org BioPerl], [http://biopython.org BioPython], [http://bioruby.org BioRuby]) since these packages offer the user different workflow possibilities and ===BioRuby===9 KB (1,461 words) - 16:23, 3 March 2008
- ====BioRuby==== The BioRuby group contributed to this general use case by creating tools to read and wr6 KB (876 words) - 16:23, 3 March 2008
- ====BioRuby==== The BioRuby group addressed this use case by adding functionality to calculate total tr7 KB (1,007 words) - 12:50, 5 September 2007
- ===BioRuby=== This use case has been addressed by developing a BioRuby NEXUS model and a NEXUS parser, as well as developing a parser for PAUP res4 KB (552 words) - 16:22, 3 March 2008
- # ''BioRuby'' The BioRuby group developed a new NEXUS parser. The parser returns trees, data, charact41 KB (6,423 words) - 02:20, 30 March 2008
- ...rg BioPerl], [http://www.biopython.org Biopython], [http://www.bioruby.org Bioruby], [http://www.swig.org SWIG], [https://sourceforge.net/projects/ncl NCL] ....org BioPerl]/[http://www.biopython.org Biopython]/[http://www.bioruby.org Bioruby]; [http://www.swig.org SWIG]; [http://dojotoolkit.org/ dojo]; [http://gride33 KB (4,999 words) - 21:12, 22 October 2010
- ...stitute || [mailto:czmasek%40burnham%2eorg czmasek@burnham.org] || Bioruby ...University of Tokyo || [mailto:k%40BioRuby%2eorg k@BioRuby.org] || Bioruby4 KB (528 words) - 18:43, 8 October 2008
- ...rg Biojava], [http://www.biopython.org Biopython], [http://www.bioruby.org Bioruby], [http://www.blipkit.org Bioprolog]), which includes the most widely used # '''Bioruby''': create object model for phylogenetic trees (''there doesn't seem to be10 KB (1,452 words) - 11:03, 5 September 2007
- ...es and toolkits: Perl (Bioperl), Java (Biojava), Python (Biopython), Ruby (Bioruby), Prolog (Blipkit), R (Bioconductor?) ...es and toolkits: Perl (Bioperl), Java (Biojava), Python (Biopython), Ruby (Bioruby), Prolog (Blipkit), R (Bioconductor?)1 KB (201 words) - 11:04, 5 September 2007
- ===BioRuby Targets===16 KB (2,329 words) - 11:27, 5 September 2007
- ===phyloXML support in BioRuby=== .../en/ Ruby]. More specifically, extend the open source [http://bioruby.org/ BioRuby project] to support phyloXML. This will probably entail (i) the development56 KB (8,424 words) - 21:11, 22 October 2010
- ...]] project idea (namely, choosing Biopython as the Bio* library instead of BioRuby). ...how/google/gsoc2009/nescent/t124022800294 Implementing phyloXML support in BioRuby] ===78 KB (11,838 words) - 16:25, 23 December 2010
- ...distance. The goal of this project is to implement support for phyloXML in BioRuby. [[BioRuby PhyloXML HowTo documentation]]16 KB (2,498 words) - 23:45, 7 November 2009
- ...|| [[PhyloSoC:PhyloXML_support_in_BioRuby|Implementing phyloXML support in BioRuby]] || [[User:Czmasek|'''Chris Zmasek''']]; [[User:Pjotrp|Pjotr Prins]]2 KB (278 words) - 14:26, 12 March 2010
- * [[PhyloSoC:PhyloXML_support_in_BioRuby|BioRuby implementation]] (current)1 KB (184 words) - 16:22, 23 December 2010