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  • [[Category:Bioruby]]
    3 KB (492 words) - 14:42, 20 May 2009
  • ...ng and exchanging data of annotated phylogenetic trees. PhyloXML parser in BioRuby is implemented in Bio::PhyloXML::Parser and writer in Bio::PhyloXML::Writer In addition to BioRuby library you need a libxml ruby bindings. To install:
    2 KB (358 words) - 14:21, 14 August 2009
  • '''Project:''' Implementing phyloXML support in BioRuby ...L] within the bioinformatics programming toolkit [http://www.bioruby.org/ BioRuby]. My code takes advantages of specialized XML libraries to boost the speed
    9 KB (1,344 words) - 21:01, 23 September 2009
  • ...0/nescent/t127230761223 Develop an API for NeXML I/O, and, RDF triples for BioRuby]</span> === ...XML I/O for BioRuby| Evolution and the semantic web in Ruby: NeXML I/O for BioRuby]] project idea.
    65 KB (9,936 words) - 15:24, 23 December 2010
  • ...s page has moved to: https://github.com/rvosa/bio-nexml/wiki/NeXML-API-for-BioRuby [[Category:NeXML and RDF API for BioRuby]]
    152 bytes (22 words) - 18:04, 22 September 2011
  • === BioRuby forester === ...other computer programs or toolkits (such as [http://bioruby.open-bio.org/ BioRuby]). Although forester is mostly written in Java, it also contains components
    80 KB (12,076 words) - 06:01, 17 December 2012
  • ...s page has moved to: https://github.com/rvosa/bio-nexml/wiki/NeXML-API-for-BioRuby [[Category:NeXML and RDF API for BioRuby]]
    152 bytes (22 words) - 18:06, 22 September 2011
  • * Request for feedback from the BioRuby community( this will be done at the end of the week ) * Check out the serializer API in the [[NeXML and RDF API for BioRuby]].
    4 KB (696 words) - 08:15, 3 July 2010
  • '''Project:''' Develop an API for NeXML I/O, and, RDF triples for BioRuby ...ioRuby users to work seamlessly with NeXML files. My code integrates into BioRuby's existing framework for manipulating phylogenetic and comparative data on
    5 KB (753 words) - 17:06, 22 October 2010
  • ** BioRuby, Biopython, jsPhyloSVG, TreeGraph 2, TreeViewJ, TreeGradients, Treevolution
    2 KB (289 words) - 13:24, 1 June 2011
  • ...ing alignment classes and functions, or equivalents in BioPerl, BioJava or BioRuby (e.g.), will be helpful. Understanding of the practical uses of codon align
    65 KB (9,901 words) - 10:41, 14 February 2014

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