Difference between revisions of "R Hackathon 1/Divergence Time Estimation SG"

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** implement new models of rate change other than [http://en.wikipedia.org/wiki/Poisson_distribution Poisson] approximation
 
** implement new models of rate change other than [http://en.wikipedia.org/wiki/Poisson_distribution Poisson] approximation
 
** implement code in C for cross checking (Swofford)
 
** implement code in C for cross checking (Swofford)
 +
 +
*Accomplishments
 +
** new tree parameterization (Swofford)
 +
** wrote [https://www.nescent.org/wg_phyloinformatics/R_Hackathon/Divergence_Time_Estimation HowTo] estimate divergence times in R

Revision as of 16:06, 14 January 2008

  • Participants: Bell, Loarie, Swofford, Waddell
  • Targets
    • recode penalized likelihood method in ape
    • implement new models of rate change other than Poisson approximation
    • implement code in C for cross checking (Swofford)
  • Accomplishments
    • new tree parameterization (Swofford)
    • wrote HowTo estimate divergence times in R