Difference between revisions of "R Hackathon 1/Current Data Representations"

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(Ape)
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== Ape ==
 
== Ape ==
 +
There are two main data classes in ape: "phylo" and "DNA.bin".
  
 
== apTreeshape ==
 
== apTreeshape ==

Revision as of 05:24, 23 November 2007

On this page, for the test set of sample trees and datasets and any other relevant files, describe success/failure in loading the file, any information lost, and how the objects are represented in R (pending a different/better idea, we could use a similar format as used for the 'phylo' class (pdf) or the scheme for coding nucleotides (pdf)).

Ade4

Ape

There are two main data classes in ape: "phylo" and "DNA.bin".

apTreeshape

ComPairWise

Geiger

Laser

OUCH

PaleoTS

PhyloGR

PhySim