Project Plan for NeXML and RDF API in BioRuby

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Revision as of 00:34, 26 May 2010 by Yeban (talk)
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Week 1

Development of the NeXML parser.

  • Design classes to encapsulate, and parse and return corresponding objects for:
    • Taxa( otu )
    • Taxa block( otus ) and
    • Sets( class )

Week 2

  • Design classes to encapsulate, and parse and return corresponding objects for:
    • Trees( trees )
    • Tree( tree ), Network( network ), Node( node ) and Edge( edge )

Week 3

  • Design classes to encapsulate, and parse and return corresponding objects for:
    • Character block( characters )
    • format, states, state, char
    • matrix, row

Week 4

Make sure that the API for the parser is in place, with software development iterations, tests and documents.

Week 5

Development of the NeXML serializer

  • Extend the already designed classes to serialize:
    • Taxa( otu )
    • Taxa block( otus ) and
    • Sets( class )

Week 6

  • Extend the already designed classes to serialize:
    • Trees( trees )
    • Tree( tree ), Network( network ), Node( node ) and Edge( edge )

Week 7

  • Extend the already designed classes to serialize:
    • Character block( characters )
    • format, states, state, char
    • matrix, row

Week 8

Make sure that the API for the NeXML serializer is in place, with software development iterations, tests and documents.

Week 9

Design classes for semantic annotation.

Week 10

Week 11

Week 12

A discussion on API can be found here - NeXML and RDF API for BioRuby