Difference between revisions of "Project Plan for NeXML and RDF API in BioRuby"

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(Week 3)
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* Parse <code>trees</code>, <code>tree</code>, <code>node</code>, <code>edge</code> and return objects of the corresponding class.
 
* Parse <code>trees</code>, <code>tree</code>, <code>node</code>, <code>edge</code> and return objects of the corresponding class.
 
== Week 3 ==
 
== Week 3 ==
* Design classes to encapsulate:
+
* Design classes to encapsulate, and parse and return corresponding objects for:
 
** Character block( <code>characters</code> )
 
** Character block( <code>characters</code> )
 +
** <code>format</code>, <code>states</code>, <code>state</code>, <code>char</code>
 +
** <code>matrix</code>, <code>row</code>
 +
 
== Week 4 ==
 
== Week 4 ==
 
== Week 5 ==
 
== Week 5 ==

Revision as of 00:18, 26 May 2010

Week 1

Development of the NeXML parser.

  • Design classes to encapsulate:
    • Taxa( otu )
    • Taxa block( otus ) and
    • Sets( class )
  • Parse otu, otus and class and return objects of the corresponding class.

Week 2

  • Design classes to encapsulate:
    • Trees( trees )
    • Tree( tree ), Network( network ), Node( node ) and Edge( edge )
  • Parse trees, tree, node, edge and return objects of the corresponding class.

Week 3

  • Design classes to encapsulate, and parse and return corresponding objects for:
    • Character block( characters )
    • format, states, state, char
    • matrix, row

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Week 10

Week 11

Week 12

A discussion on API can be found here - NeXML and RDF API for BioRuby