Difference between revisions of "Project Plan for NeXML and RDF API in BioRuby"

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(New page: == Week 1 == Development of the NeXML parser. * Design classes to encapsulate: ** Taxa( <code>otu</code> ) ** Taxa block( <code>otus</code> ) and ** Sets( <code>class</code> ) * Parse <cod...)
 
(Week 2)
Line 9: Line 9:
 
* Design classes to encapsulate:
 
* Design classes to encapsulate:
 
** Trees( <code>trees</code> )
 
** Trees( <code>trees</code> )
** Tree( <code>tree</code> ) and Network( <code>network</code> )
+
** Tree( <code>tree</code> ), Network( <code>network</code> ), Node( <code>node</code> ) and Edge( <code>edge</code> )
** Character Blocks
 
  
 
== Week 3 ==
 
== Week 3 ==

Revision as of 00:06, 26 May 2010

Week 1

Development of the NeXML parser.

  • Design classes to encapsulate:
    • Taxa( otu )
    • Taxa block( otus ) and
    • Sets( class )
  • Parse otu, otus and class return objects of the corresponding class.

Week 2

  • Design classes to encapsulate:
    • Trees( trees )
    • Tree( tree ), Network( network ), Node( node ) and Edge( edge )

Week 3

Week 4

Week 5

Week 6

Week 7

Week 8

Week 9

Week 10

Week 11

Week 12

A discussion on API can be found here - NeXML and RDF API for BioRuby