PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes

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Revision as of 14:15, 1 June 2011 by Dp (talk)
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Description

This is Daniel Packer's PhyloSOC notes page. This page will be used as a scratchpad and information repository during the project.

XML standards

NexML

PhyloXML

  • Homepage
  • schema
  • yahoo group
  • Maintainer: Christian Zmasek affiliated w/ NESCent (working groups?)
  • Software support:
    • [1], BioPerl TreeIO
    • BioRuby, Biopython, jsPhyloSVG, TreeGraph 2, TreeViewJ, TreeGradients, Treevolution, iPhy, Archaeopteryx, phyloxml_converter, decorator, confadd, iTOL, OMA Orthologs Project

Stuff to be sorted / analyzed