PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes

From Phyloinformatics
Revision as of 14:06, 1 June 2011 by Dp (talk)
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Description

This is Daniel Packer's PhyloSOC notes page. This page will be used as a scratchpad and information repository during the project.

XML standards

NexML

  • Homepage
  • schema
  • Maintainer: Rutger Vos with NESCent
  • Evolved from NEXUS
  • Supported by many apps/langauges
    • Mesquite
    • DAMBE
    • Phylobase/R
    • BioPerl TreeIO, AlignIO
    • DendroPy

PhyloXML

Stuff to be sorted / analyzed