Difference between revisions of "PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes"

From Phyloinformatics
Jump to: navigation, search
m
Dp (talk)
m
Line 20: Line 20:
 
== PhyloXML ==
 
== PhyloXML ==
  
 +
* [http://www.phyloxml.org/ Homepage]
 +
*
 
* [http://www.phyloxml.org/documentation/version_1.10/phyloxml_xsd.png schema]
 
* [http://www.phyloxml.org/documentation/version_1.10/phyloxml_xsd.png schema]
 
* Supported by
 
* Supported by
** BioPerl TreeIO: http://www.bioperl.org/wiki/Module:Bio::TreeIO::phyloxml
+
** [http://www.bioperl.org/wiki/HOWTO:PhyloXML], [http://www.bioperl.org/wiki/Module:Bio::TreeIO::phyloxml BioPerl TreeIO]
 
+
** BioRuby, Biopython, jsPhyloSVG, TreeGraph 2, TreeViewJ, TreeGradients, Treevolution, iPhy, Archaeopteryx, phyloxml_converter, decorator, confadd, iTOL, OMA Orthologs Project
  
 
== Stuff to be sorted / analyzed ==
 
== Stuff to be sorted / analyzed ==

Revision as of 14:13, 1 June 2011

Description

This is Daniel Packer's PhyloSOC notes page. This page will be used as a scratchpad and information repository during the project.

XML standards

NexML

PhyloXML

  • Homepage
  • schema
  • Supported by
    • [1], BioPerl TreeIO
    • BioRuby, Biopython, jsPhyloSVG, TreeGraph 2, TreeViewJ, TreeGradients, Treevolution, iPhy, Archaeopteryx, phyloxml_converter, decorator, confadd, iTOL, OMA Orthologs Project

Stuff to be sorted / analyzed