Difference between revisions of "PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes"

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** https://www.nescent.org/wg/evoinfo/index.php?title=PhyloWS
 
** https://www.nescent.org/wg/evoinfo/index.php?title=PhyloWS
 
** http://groups.google.com/group/phylows?pli=1
 
** http://groups.google.com/group/phylows?pli=1
 +
*** [http://groups.google.com/group/phylows/browse_thread/thread/3ea798b6d4fbff17 In particular, Rutger Vos' Oct 2010 post about event representations]
  
 
[[Category:PhyloSoC]]
 
[[Category:PhyloSoC]]

Revision as of 14:08, 1 June 2011

Description

This is Daniel Packer's PhyloSOC notes page. This page will be used as a scratchpad and information repository during the project.

XML standards

NexML

  • Homepage
  • schema
  • Maintainer: Rutger Vos with NESCent
  • Evolved from NEXUS
  • Supported by many apps/langauges
    • Mesquite
    • DAMBE
    • Phylobase/R
    • BioPerl TreeIO, AlignIO
    • DendroPy

PhyloXML

Stuff to be sorted / analyzed