Difference between revisions of "PhyloSoC: Interoperable exchange of gene tree reconciliation map:notes"

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* [https://pods.iplantcollaborative.org/wiki/display/iptol/Reconciled+Trees+in+XML James Estill's tree rec XML notes]
 
* [https://pods.iplantcollaborative.org/wiki/display/iptol/Reconciled+Trees+in+XML James Estill's tree rec XML notes]
 
* CDAO: http://sourceforge.net/apps/mediawiki/cdao/index.php?title=Main_Page
 
* CDAO: http://sourceforge.net/apps/mediawiki/cdao/index.php?title=Main_Page
* PhyloWS: https://www.nescent.org/wg/evoinfo/index.php?title=PhyloWS#Phyloinformatics_Web_Services_API:_Overview
 
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/Data+Integration
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/Data+Integration
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/Name_Resolution_Prototype
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/Name_Resolution_Prototype
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/DA_Workshop_Meeting_Notes
 
* https://pods.iplantcollaborative.org/wiki/display/iptol/DA_Workshop_Meeting_Notes
 +
 +
* PhyloWS
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** https://www.nescent.org/wg/evoinfo/index.php?title=PhyloWS
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** http://groups.google.com/group/phylows?pli=1
  
 
[[Category:PhyloSoC]]
 
[[Category:PhyloSoC]]

Revision as of 14:06, 1 June 2011

Description

This is Daniel Packer's PhyloSOC notes page. This page will be used as a scratchpad and information repository during the project.

XML standards

NexML

  • Homepage
  • schema
  • Maintainer: Rutger Vos with NESCent
  • Evolved from NEXUS
  • Supported by many apps/langauges
    • Mesquite
    • DAMBE
    • Phylobase/R
    • BioPerl TreeIO, AlignIO
    • DendroPy

PhyloXML

Stuff to be sorted / analyzed