PhyloSoC:BioPerl integration of the NeXML exchange standard and Bio::Phylo toolkit/Benchmark Results

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Revision as of 11:07, 20 July 2009 by Chmille4 (talk) (New page: == Benchmark Results == The two main methods of each module was benchmarked using the Benchmark.pm module included in Perl. Several data files were used and the results were normalized ag...)
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Benchmark Results

The two main methods of each module was benchmarked using the Benchmark.pm module included in Perl. Several data files were used and the results were normalized against the most time consuming method (i.e. Bio::Nexml::write has a %100 mark and the rest are compared to it).

Bio::TreeIO::nexml

_parse()

write ()

Bio::AlignIO::nexml

_parse ()

write ()

Bio::SeqIO::nexml

_parse ()

write()

Bio::Nexml

_parse ()

write()