Difference between revisions of "Integrating RNA web services in Jalview using JABAWS"

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=Abstract=
 
Jalview is an alignment editor, originally developed for protein sequences, that is used in a variety of web pages and is also available as a stand-alone project. Jalview also includes a client that interacts with web services via JABAWS. In previous Google Summers of Code, students have worked to extend the functionality of Jalview to handle non-coding RNA sequences. Many web services already exist that are related to RNA, but they are not yet available to the Jalview client. During this Google Summer of Code, I will integrate the Annotate3D and RNAfold web services with Jalview using the JABAWS system.
 
  
=Student=
 
[mailto:Tori.Arendt@gmail.com Tori Arendt]
 
 
=Mentors=
 
[http://www.lix.polytechnique.fr/~ponty/ Yann Ponty] <br>
 
[[User:Jimprocter| Jim Procter]]
 
 
=Important Links=
 
[http://source.jalview.org/gitweb/| Jalview and JABAWS Source] <br>
 
Jan Engelhardt's 2011 GSoC Project: [[PhyloSoC: Extending Jalview support for handling RNA]]<br>
 
Lauren Liu's 2010 GSoC Project: [[PhyloSoC:Extending Jalview to Support RNA Alignment Annotation and Secondary Structure Visualization]]<br>
 
[http://www.jalview.org/  Jalview]<br>
 
[http://www.compbio.dundee.ac.uk/jabaws/  JABAWS]<br>
 
[http://varna.lri.fr/  VARNA]<br>
 
[http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi  RNAfold]<br>
 
[http://paradise-ibmc.u-strasbg.fr/  Annotate3D]<br>
 
 
=Timeline=
 

Latest revision as of 10:32, 10 May 2012