#NEXUS begin taxa; dimensions ntax=27; taxlabels Chlamydomonas_reinhardtii_AAB04944.1 Trypanosoma_cruzi_AAB39949.1 Caenorhabditis_elegans_AAB53822.1 Mus_musculus_AAB60902.1 Saccharomyces_cerevisiae_AAB68939.1 Babesia_bovis_AAB69755.1 Candida_albicans_AAB86583.1 Pneumocystis_carinii_AAC24764.1 Penicillium_chrysogenum_AAC36585.1 Tritrichomonas_foetus_AAC47734.1 Tritrichomonas_foetus_AAC47735.1 Trichomonas_vaginalis_AAC48291.1 Toxoplasma_gondii_AAC63943.1 Neurospora_crassa_AAD28503.1 Arabidopsis_thaliana_AAF01529.1 Schizosaccharomyces_pombe_AAF19051.1 Drosophila_melanogaster_AAF57955.1 Oryza_sativa_BAA92737.1 Arabidopsis_thaliana_BAA97372.1 Arabidopsis_thaliana_BAB11186.1 Escherichia_coli_CAA27580.1 Rattus_norvegicus_CAA39937.1 Entamoeba_histolytica_CAA50204.1 Onchocerca_volvulus_CAA57658.1 Candida_sp_CAA72335.1 Caenorhabditis_elegans_CAB02913.1 Arabidopsis_thaliana_CAB87434.1; end; begin characters; dimensions nchar=1035; format datatype=dna missing=? gap=-; matrix Chlamydomonas_reinhardtii_AAB04944.1 ???atggccctcgcgatgaaggctcaggcttccagcctggtggctggc---------------------------cagcgccgcgctgtgcgccccgcttcgggccgtcgcgctgtgatcactcgc------------------------gctgctctggagctgaagtctcccccctacgctctggatgctctggagccccac---atgagcaagcagaccctggagttccactggggcaagcaccaccgcgcctacgtggataacatgaacaagcaggtcgctggcactccc---ctggac---------------------------ggcaagtcgctggaggagatcgtcctggccagctggaacaatggccag------cccaccccggtgttcaacaacgccgctcaggtctggaaccacactttcttctgggagagcatgaagccc---------aacggtggcggtgcccccaccggc---------gcgctggctgaggccatcacccgcgacttcggcagcctggacaagttcaaggaggagttcaagcaggctggcatgacccagttcggctctggctgggcctggctgaacgccgacaag------------------------------------------------acc------ggcaagctgtcgatcagcaagtcgcccaacgccgtgaaccccgtggtggag------------------ggcaagacccccatcctgactgtcgatgtgtgggagcacgcctactacattgacgtgcagaaccgccgccccgactacatcaccaccttcatggagaagctgatcaactgggacgccgttgctcagcgctacgcccgtgccaccaag?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Trypanosoma_cruzi_AAB39949.1 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atggtcttcagcattcctccgctcccatggggctacgatgggcttgcggcaaaaggcctctcaaagcagcaggtgacgctccactacgacaaacaccatcaggggtatgtgacgaaactcaacgccgcggcgcagacaaactccgcgcttgca---------------------------acgaaaagcatcgaggaaatcatcaggacggag---aaaggc------------------cccatattcaaccttgcggcgcagatttttaaccacacgttctactgggagagcatgtgtcct---------aatggcggtggcgagccgacggga---------aaagttgccgacgagatcaacgcttcatttggcagttttgcgaagttcaaggaggagtttacaaacgtggctgtgggccactttggctcgggtttggcgtggcttgtgaaggacacc---------------------------------------------aattcc------ggcaaactgaaagtctaccagacgcatgacgcgggatgtccactgacagagccc---------------aacttgaagcctctccttacatgcgatgtatgggagcatgcgtactacgtggactacaagaacgaccgtgcggcatatgtgcagaccttttggaac---gttgtcaactgg------------aagaacgtggaacggcaactt????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Caenorhabditis_elegans_AAB53822.1 ???????????????????????????????????????????????????????????????????????????atgctgcaatctactgctcgcactgcttcaaagcttgttcaaccggttgcgggagttctcgccgtccgc------tccaagcacactctcccagatctcccattcgactatgcagatttggaacctgta---atcagccatgaaatcatgcagcttcatcatcaaaagcatcatgccacctacgtgaacaatctcaatcagatcgaggagaaacttcacgaggctgtttcg---------------------aaagggaatctaaaagaagcaattgctctccaacca---------------------------gcgctgaaattcaatggtggtggacacatcaatcattctatcttctggaccaacttggct------------aaggatggtggagaaccttcaaag---------gagctgatggacactattaagcgcgacttcggttccctggataacttgcaaaaacgtctttctgacatcactattgcggttcaaggctctggctggggatggttgggatattgcaag---------------------------------------------aaagac------aaaatcttgaagatcgccacctgtgcaaaccaggat---cctttggaagga---------------------atggtcccactttttggaattgacgtttgggagcacgcctactacttgcagtacaaaaatgtccgcccagactatgtccatgctatttggaag---attgccaactggaagaatatcagcgagagatttgccaatgctcgacaa?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Mus_musculus_AAB60902.1 ???????????????????????????????????????????????????????????????????????????atgttgtgtcgggcggcgtgcagcacgggcaggaggctgggccctgtggccggtgccgcgggctcccgg------cacaagcacagcctcccagacctgccttacgactatggcgcgctggagccacac---attaacgcgcagatcatgcagctgcaccacagcaagcaccatgcggcctacgtgaacaacctcaacgccaccgaggagaagtaccacgaggctctggcc---------------------aagggagatgttacaactcaggtcgctcttcagcct---------------------------gcactgaagttcaatggtgggggacatattaatcacaccattttctggacaaacctgagccct---------aagggtggtggagaacctaaagga---------gagttgctggaggctatcaagcgtgactttgggtcttttgagaagtttaaggagaagctgacagccatgtctgtgggagtccaaggttcaggctggggctggcttggcttcaataag---------------------------------------------gagcaa------ggtcgcttacagattgctgcctgctctaatcaggac---ccattgcaaggaacaacaggc------------cttattccgctgctggggattgacgtgtgggagcacgcttactaccttcagtataaaaacgtcagacctgactatctgaaagctatttggaat---gtaatcaactgggagaatgttactgaaagatacacagcttgcaagaag?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Saccharomyces_cerevisiae_AAB68939.1 ?????????????????????????????????????????????atgttc---------------------gcgaaaacagcagctgctaatttaaccaagaagggtggtttgtcattgctctccacc---acagcaaggaga------accaaagtcaccttgccagacttgaagtgggacttcggtgcattggaaccttat---atctccggtcaaatcaacgaattgcattacaccaagcaccatcaaacttatgtgaacggattcaacactgctgttgaccaattccaagaactctcagatcttctggccaaggagccctctcccgcaaacgcaagaaaaatgattgctatccaacaa---------------------------aacatcaagttccatggcggtggtttcacaaaccactgtctattctgggaaaacctggctccagagtcg---cagggcggtggtgaaccacccaccggc------gctttggcaaaggcaatcgacgagcagtttggcagtctggacgagctgattaagttgaccaacacaaagctagcaggcgtgcagggctccggatgggccttcattgtgaaaaacctc---------------------------------------------tctaat---ggaggcaagctggacgttgttcaaacctacaaccaggat---accgtcacaggccca------------------ctagttcctctagttgccattgacgcctgggaacacgcctactacttgcagtaccaaaacaagaaagccgactacttcaaagccatttggaat---gtggtcaactggaaagaagcatccagaagattcgatgctggcaagatc?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Babesia_bovis_AAB69755.1 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atggccttcaaactaccagcgctcccttacggcatgagggaactcatccctcac---atcagcgaggaaaccttgagcttccactacggcaaacaccatgcaggctacgtcaacaaactaaacagtctcatcaagggc---acacctatggaa---------------------------tcatgcactatcgaagagttgatactcggacaa---accggt------------------gccgtattcaacaacgcagcacaaatatggaaccacaccttctactggaactccatgggacct---------aactgtggaggcgagcccaccggt---------cccatccgcaagaagatcgaggaaaagttcggttctttcagcgcattcaagaccgatttctctaaccttctcgcagggcatttcggatccggttggggatggttggtgctaaaggat---------------------------------------------gatggc---------acagctgatattgtccaaacacatgatgcaggatcaccattaaaagagaat---------------ctagggcgcccactactttgctgtgatgtctgggagcatgcttactacattgactacaagaatgaccgtttgagctacattaacagctggtggaat---cttgtcaactgggacttcgccaataagaacctcgaagctcccttcaagtggtct???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Candida_albicans_AAB86583.1 ?????????????????????????????????????????????atgttttctatcagatcatcatctcgtgttttattaaaggcttcttccgcaaccacccgtgctactttgaacgccgctgcttccaagactttcactaga------tctaaatatagtttaccagaattggactatgaattctccgctactgaaccatac---atttctggtcaaataaacgaaattcactacactaaacatcaccaaacttatgttaacaaccttaatgcttcaattgaacaagccgttgaagccaaatct---------------------aaaggtgaagttaaaaaattggttgccttagaaaaa---------------------------gccatcaatttcaacggtggtggttacctcaatcattgtttgtggtggaaaaacttggctcctgtctct---caaggtggtggtcaaccaccaagtgaagattccaaattaggtaaacaaatcgtcaaacaatttggttctttggataaattgattgaaatcaccaatggcaaattggctggtattcaaggttctggatgggcttttattgttaaaaacaaa---------------------------------------------gccaat---ggtgatactattgatgtcatcaccactgctaaccaagat---actgttactgatccaaac---------------ttggttccattgattgctattgatgcttgggaacatgcttattatttgcaataccaaaatgttaaagctgattacttcaagaacctttggcat---gttatcaactggaaggaagctgaaagaagatttgaattt??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Pneumocystis_carinii_AAC24764.1 ????????????????????????????????????????????????????????????????????????atgttaaagtcatttagagatttggttttcaaaaaaactattaaaaactctcgtttt------ttttctcat------tcaaaacatgttttaccaagtcttccttatgattatcaggcattagaaccatat---ctttcagcagatttaattgagcttcattataatcaacatcatcgggcatatgttacaaatttaaataagacgatagagaaatattatgagggaaatgaa---------------tcatcattagattcgtttattaaccggttaaatcttttaaca---------------------------tctataaaattttttgcaggtggtcatattaatcattcattatattgggaaaatcttcttcctaataaa---caaggaggcggggaaataattaatgga------cctttagtagaagctattaagaaagaatggaaaagtgtcgatgaatttattcgtatatttaatatgcaattggcaggaattcaaggaagtggatgggcatggcttgtaaaatcg------------------------------------------------cctttt---agtcaacgtctaagtattcaaataacaatgaatcaagat---gttgtgacacagggt---------------------aaagttattcttggaatcgatgcatgggaacattcatattatgttcaatatttaaataataaaacaaaatattttgaaaatatatggaat---gtgatcaattggaaagttatgaatcaacgatttgagcaa??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Penicillium_chrysogenum_AAC36585.1 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgacttct------------------------caaacacacacactgcctcctctcccctatgcctacgatgcgttggagcccgtc---atctccaagcagataatggagctgcatcatcagaagcaccaccaaacttacatcaacaatctgaacgcagcgctctccgcccaagcttctgcaacagca---------------------tcaaatgatgtccccaccttgatttcattgcaacaa---------------------------aagcttcgctttaacggtggaggccatatcaatcactccctgttctggaagaacctgactccccccggt---acacctgcgaatgacatcgctggt---gctcccgctctgcgcgaagccatcgtctcccgctggggctcgcatgaagcgtttgtcaaggcttttggcgccgagctgctcggtcttcaggggagtggctggggatggctggtgagcaagggt---------------------------------------------ggtgcc---aagggacgacttgagatcgttacgactaaggaccaggac---cctgttaatgcacctgat------------------gtgcctgtcttcggtgtggatatgtgggagcatgcctactacctccagtacctgaacaacaaggctggctatgttgaggggatttggaag---atcattcactgggctgaagctgagaagcgttacactgctggcgttgagaacccg---------ctgaagctg?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tritrichomonas_foetus_AAC47734.1 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgttcagcatcgctccaatcccatacatggaaacaggaatcagtggattc---cttaccaagcacgccgtcgagatccacgtcacaaagcaccaccaagcctacgtcgacttcgctaacaagaatgttccaggaacagaa---ttcgaa---------------------------ggcaagccaatcgaagaaatcatccaaaaggctacagga---------------------ccactcttcaacaacgttgcccaacatttcaaccacgccttcttctggaactgcctcacagcc---------aagaagcaagaagttcca---gct---------ggcgtcgcatctttcctcgccaagcactttgaaagcgttgacaacttcaaggcccaattcgtccaaaaggcttcaacagtcttcggctccggatggtgctacctcgcccaaaacaag------------------------------------------------gac------aagacaatctcaatcaatcaatactcaaacgccctcaacccagtcaaggac------------------ggaggtgttccactcctttgcgttgacacctgggagcacgcctggtacatcgactacgaaaaccgcaaggccgaatacttcaacaaattctgggat---gcctgcaactgggaattccttgagaagaaccttaaggccgccggtctcatt??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tritrichomonas_foetus_AAC47735.1 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgttcagcatcgaaccagtttcattcttagagtcaggacttccaaacttc---ctcacaccacacgctgtccagatccacgttacaaagcaccaccaaggctacgtcgacatggccaacaaaattgtcccagaaagcgaa---ttcaag---------------------------ggcaaatccgttgaagaaatcattcaaaatgcttcaggt---------------------ccagtcttcaataacgtcgcccagcacttcaatcacagctttttctggaaatgtttgacagca---------acaacacaagaagttcca---gcc---------gccgttgcctcgttcctttcaaagcatttcgaaagcgtcgataacttcaaggcccagttcgtccaaaaggcatcaacagttttcggaagcggatggtgctatcttgccgtcaacaag------------------------------------------------gat------ggctcagtttcaatcaaccaatactcaaacgctctcaatccagtaaaggat------------------ggcggtgttccactcctttgcgttgacacatgggagcacgcctggtatatcgattatgaaaaccgcaaggccgaatacttcaacaaattctggggt---gttgtcaactggaactttgttgaagaaaaccttaagaaagccaaattaatc??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Trichomonas_vaginalis_AAC48291.1 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgttcacaatggagcatcctgcctacttgaagactggtcttccaggcttc---ctcacacagcacgctgtcgaggtccatgttacaaagcaccatcagtcctacattgatacagctaacaagcttatcgttggctctggc---ttcgaa---------------------------ggcaagccaattgaagaaatcatccaaaaggctcagggc---------------------ccactcttcaacaacgttgcccagcacttcaaccactccttcttctggaagtccctctccgct---------gagaaggttgctgttcca---gct---------catgttgctgagctcctcaagaagaacttcggctctgtcgagaagttccaggaaacattcacagctaaggcttcaacagtcttcggctctggctgggcttacctttacaagacaaag------------------------------------------------gac------ggcaagcttgagatcggccagtactccaacgctgctaacccagtcaaggat------------------ggccttacaccaattctcacagtcgatacatgggaacatgcttggtacatcgactacgagaacagaaaggctgagtacttcaagaactactggaac---cacgtcaactggaactttgttgagcagaacttaaaggctgctggtttg?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Toxoplasma_gondii_AAC63943.1 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atggtattcactttgcccccgctcccctacgcgcatgacgcgcttgctccccat---atcagctcggagacacttcagttccatcatggcaaacaccatgcaggctacgtggctaagctgaatggcttcattgaagga---accgctttcgcg---------------------------ggaaagactctagaagaggtgatccgtacgtct---actgga------------------gccattttcaataatgcggctcaagtgtggaatcatacattctacttcagcagcatgaagccaccaatgtctggtggtggtggagaacctactggg---------agacttctcgacgaaatcaagaaggaattcacatctgttgagaactttaaggacgagttttcgaaggttgccgctggccactttggctcaggttgggcatggcttgtttgggacaaa---------------------------------------------caaggc------aagaaggtcggcattgagcaaactcatgatgcgggcaccccgataacggagccg---------------atgaaggttccgctcctttgctgtgatgtatgggagcatgcctactaccttgacagaaagaacgacaggccagcgtacatcaaagcatggtggaat---gttgtaaactgggacttcgccagcaagaacttggagaatgccttgaaa?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Neurospora_crassa_AAD28503.1 ?????????????????????????????????????????????????????????atggtcaatctaggaagcatttggcaaaaccttctcgcctcgcaagctcctctccagtccatgacaggcaacgcaaccaccatggccggcctcgcgacttattcccttccgcagctaccatatgcctacaatgctctggagccctac---atctcagcccagatcatggagcttcaccacagcaagcaccatcagacttacgtgaccaatctcaacaacgccttgaaagttcacgtcgccgccatcgcc---------------------tctagcgatatccccgcccagatcgcccagcagccc---------------------------gccatcaagttcaacggcggcggccacatcaatcactcgctcttctggaagaacctggcccccgctgag---accccagagaccaactactcgaaggcggctccttcgctggcggccgaaattgagaagacatggggtagttttgacgagttcaagaaggccttctctgctgcgctcttgggcatccagggcagtggctggggttggctcgttaaggagtct---------------------------------------------actgccgagaagggaaggctgcgtatcattactaccaaggatcaggat---cccgtcgtgggcggtgag------------------gtccctgtgttcggggtggacatgtgggagcatgcgtactacctccagtacctaaacggaaaggctgcgtatgttgagaatatctggaag---gtgatcaactggaagacagccgaggagcgcttccagggtagtcgtgaggacgcttttgcggacctcaaggctttgcta???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Arabidopsis_thaliana_AAF01529.1 ??????????????????????????????????????????????????????????????????atggcgattcgttgtgtagcgagtagaaaaaccctagccggcttgaaggagacatcatcgaggctattgaggatcagagggattcagacttttacgcttcctgatcttccttacgattatggcgcattggaaccggcc---attagtggagagatcatgcagattcatcaccagaagcatcaccaggcttatgttactaattacaataatgctcttgagcagcttgatcaagctgtgaac---------------------aagggagatgcttccactgttgttaagttgcagagc---------------------------gccatcaaattcaacggcggaggtcatgtcaaccattcgattttctggaagaaccttgctccttccagt---gaaggtggtggagagccaccaaaa------ggatctcttggtagtgccattgacgctcactttggctcccttgaaggtctggtgaaaaagatgagtgctgagggtgctgcagtgcaaggctcaggatgggtgtggctcggactagacaaa---------------------------------------------gaactg------aagaagctagttgttgacacaactgccaatcaggat---ccattagtgacaaaaggaggaagc---------ttggtacctctggtgggtatagatgtttgggagcacgcctactacttgcagtacaaaaatgtgaggcctgagtatctgaagaatgtatggaaa---gtgatcaactggaaatatgcaagcgaggtttatgagaaggaaaacaac?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Schizosaccharomyces_pombe_AAF19051.1 ?????????????????????????????????????????????????????????????????????atgcttcgctttttgtct------aagaactctgtagccgctattaggaacgtctcaattgccaggggagttcat------actaaggctactcttccccctttaccttatgcttacaatgcacttgaacctgct---ttgtcggaaacgattatgaagttacatcatgacaagcatcaccaaacatatgttaacaacttgaatgccgctcaggagaagctggccgatcccaac---------------------------ctcgatttggagggagaggttgcccttcaagct---------------------------gctattaaattcaatggcggtggtcacatcaatcattctctcttttggaagattttagcacctcaaaag---gaaggtggtggcaaacccgtcacc---tctggatctttacataaggctataacctctaaatggggttctttggaggatttccagaaggaaatgaatgccgccttagctagcatccaaggtagtggttgggcatggctaatcgtggataaa---------------------------------------------gacggt------agt---ctccgtattactactactgctaaccaagac---acgattgtcaagtccaag---------------------cccattattggaattgatgcttgggaacatgcctactatcctcaatacgagaatcgtaaggccgaatactttaaagctatttggaat---gtgattaattggaaagaggccgagtctcgttattccaaccgt???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Drosophila_melanogaster_AAF57955.1 ??????????????????????????????????????????????????????????????????????????????????????????atgttcgtggcccgtaaaatttcgcaaactgcaagc------ctggcggtgcgt------ggcaagcacaccctaccgaagctgccctacgactatgccgccctggagcctatc---atctgccgggagatcatggagctgcatcaccagaagcaccaccagacctacgtcaacaatctaaatgccgccgaggagcagctggaggaggccaagtcg---------------------aagagcgacaccaccaagctgattcagctggctcct---------------------------gccctgcgtttcaatggcggtggccacatcaaccacaccatcttctggcagaacctctcg------------cccaacaagacccagcccagcgat---------gatctgaagaaggccatcgagtcgcagtggaagagcctcgaggagttcaaaaaggagctgaccacgctgaccgtggcggtccagggctccggctggggctggctgggcttcaacaag---------------------------------------------aagtcg------ggcaaactgcaactggccgccctgcccaaccaggat---cccctggaggcctccaccggc------------ctgatcccgctcttcggcatcgatgtctgggagcacgcctactatctgcagtacaagaacgtgcgtccctcctacgtggaggccatctgggac---atcgccaactgggatgacatctcgtgccgcttccaggaggccaagaagctcggttgc????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Oryza_sativa_BAA92737.1 ???atggatgaggatgctgaagcaaatggt------------------------------------------------------gatgagtcgtcaggcactgatgaagatgcttctgtctcc------------------------------tggatagagcagcagcctcttccttatccttcagatgccctagagccatac---atcagcaaggagacggtggaacagcactggggagttcatcagaacattcacgtcgagaggctcaatggcatgattggtggcagtgag---tgggag---------------------------gggatgtcgctggggcagatgatgctatcctccttcaatgagggcagggaggcaccccatccccccttcttccatgctgcacagatatggaaccatgatttctattggcgatctatgcaacct---------ggtggcgggggaaaacccccagaa---------cgccttttgaaatttatcaacagggactttggatcctatgatggcatgattcgacaatttatggatgctgcatcaactcaatttggttctggatgggtttggctttgttacaaaacaagcaagttgcctcatgtgaaatcaagaagcccaatcccatctgataattat------ggtagactggtcatctcaaagtctccgaatgccatcaatcctcttgtctgg------------------ggtcactct---------------------------catgcatactacctggattatgaggatcggagatctgactatgtctccacatttctagagaagcttgtgtcatgggaaactgttgagtccaggcttaagaaggccgtacaacgggcagtagaaagagatgaatatgttagcacaaagcatataaggaagcaacttttagctcgggcaaagagccaaatcagagctatgcctcagcaggtcaatggggatgcaagagagcagaccagcggtcaagagaagtccctaggggtg Arabidopsis_thaliana_BAA97372.1 atgatgaatgttgcagtgacagccactccctcgtctctcttgtactctcctctgcttcttccttctcaagggccaaaccggcgaatgcaatggaaaagaaacggaaagagacggttagggacaaaggtggctgtttccggtgttatcacagctggatttgagctgaagccacctccatatcctcttgatgctctggaaccgcat---atgagccgggaaaccttggattatcactggggcaaacatcacaaaacttatgtagagaacctgaacaagcaaatcttaggcacggat---ctagat---------------------------gcattatccttggaagaagttgtgcttctttcatacaacaaaggcaat------atgcttcctgctttcaacaacgctgcacaggcttggaaccacgagttcttctgggagtctatccaacct---------ggaggtggaggaaagccaactgga---------gagctcctcagattaatagaaagagattttgggtctttcgaagagtttttggaaaggttcaagtcggctgcagcttcgaattttggttcgggttggacatggcttgcatataaggcgaatagacttgacgttgcaaatgccgttaatcctctcccaaaggaggaagac------aagaaacttgttatagtgaagacgcccaatgcagtaaatccgctcgtatgg------------------gattattctccacttctcaccattgatacctgggagcacgcttactatctggattttgagaaccgaagagctgaatacataaatacattcatggaaaagcttgtgtcatgggaaactgtaagcacaaggttggaatccgcaattgctcgagcagtgcaaagagaacaagaaggaacagagacagaagat------------------------gaagagaatccagatgatgaagtaccagaggtctatttagatagtgacatcgatgtatctgaggttgac??????????????? Arabidopsis_thaliana_BAB11186.1 ???atgagttcttgtgttgtgacgacaagctgtttctatacaatttcagattctagtatacgtttgaaatcccccaagctcctcaatctgagtaaccagcagagaagacgctctcttaggtctcgaggtggtttaaag------gttgaagcttactacggtctaaagacacctccttatccacttgatgctttggagccgtat---atgagtagaagaacactagaagtgcattggggaaaacaccatcgaggttatgtagataatctgaataaacagttagggaaagatgatagactctat---------------------------ggatacaccatggaagagcttatcaaggctacatacaacaacgggaat------cctttacccgagttcaacaacgctgcacaggtctataaccatgatttcttctgggagtcgatgcaacct---------ggtggtggagacacgcctcaaaag---------ggtgttcttgagcagattgataaggattttggttctttcacaaattttagagaaaagttcactaatgcagctcttactcagtttggttctggatgggtctggcttgtcttaaagagg---------------------------------------------gaagag------agaaggcttgaggtggtcaaaacctcaaacgccattaacccactcgtgtgg------------------gacgatattccaatcatctgcgtggatgtgtgggagcactcttattatctggactacaagaacgacagggctaagtatataaacacatttctgaaccacttggtgtcgtggaacgctgccatgagtcggatggcccgtgcagaagcgtttgtgaatcttggtgaa------------------------------------------------------------------------------------------cccaacatcccaatcgct???????????????????????? Escherichia_coli_CAA27580.1 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgagctataccctgccatccctgccgtatgcttacgatgccctggaaccgcac---ttcgataagcagaccatggaaatccaccacaccaaacaccatcagacctacgtaaacaacgccaacgcggcgctggaaagcctgccagaatttgccaacctgccggttgaagagctgattaccaaactggaccagctgccagcagacaagaaaacc---------------------------gtactgcgcaacaacgctggcggtcacgctaaccacagcctgttctggaaaggtctgaaa---------------aaaggcaccaccctgcagggt---------gacctgaaagcggctatcgaacgtgacttcggctccgttgataacttcaaagcagaatttgaaaaagcggcagcttcccgctttggttccggctgggcatggctggtgctgaaaggc---------------------------------------------gataaa------------ctggcggtggtttctactgctaaccaggattctccgctgatgggtgaagctatttctggcgcttccggcttcccgattatgggcctggatgtgtgggaacatgcttactacctgaaattccagaaccgccgtccggactacattaaagagttctggaac---gtggtgaactgggacgaagcagcggcacgttttgcggcgaaaaaa????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Rattus_norvegicus_CAA39937.1 ???????????????????????????????????????????????????????????????????????????atgttgtgtcgggcggcgtgcagcgcgggcagaagactgggccccgcggccagtaccgcgggctcccgg------cacaagcacagcctccctgacctgccttacgactatggcgcgctggagccgcac---attaacgcgcagatcatgcagctgcaccacagcaagcaccacgcgacctacgtgaacaatctgaacgtcaccgaggagaagtaccacgaggcgctggcc---------------------aagggagatgttacaactcaggttgctcttcagcct---------------------------gcactgaagttcaatggcgggggccatatcaatcacagcattttctggacaaacctgagccct---------aagggtggtggagaacccaaagga---------gagttgctggaggctatcaagcgtgactttgggtcttttgagaagtttaaggagaaactgacagctgtgtctgtgggagtccaaggttcaggctggggctggcttggcttcaataag---------------------------------------------gagcaa------ggtcgcttacagattgccgcctgctctaatcaggac---ccactgcaaggaaccacaggc------------cttattccactgctggggattgatgtgtgggagcacgcttactatcttcagtataaaaacgtcagacctgactatctgaaagccatttggaat---gtaatcaactgggagaatgttagccaaagatacatagtttgcaagaag?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Entamoeba_histolytica_CAA50204.1 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????atgtctttccaattaccacaattaccttatgcttataatgctcttgagcctcat---attagtaaagagactcttgaattccatcatgataagcatcacgctacttatgttaataagttaaatggtcttgtaaaagga---actgaacaagaa---------------------------cataaaactcttgaagaattaattaaacaaaagccaactcaa------------------gcaatttataataatgcagcccaagcatggaatcatgcattctattggaaatgtatgtgtgga------------tgtggagttaaaccatctgaa---------caattaattgctaaattaactgctgcttttggaggattagaagaatttaagaagaagtttactgagaaagctgttggacattttggaagtggatggtgttggttggttgaacatgat---------------------------------------------ggt------------aagttagagattattgatactcatgatgctgttaatccaatgaccaat------------------ggaatgaaaccattattaacttgtgatgtttgggaacatgcttattacattgacactagaaacaacagagctgcttacttagaacattggtggaat---gtagtcaactgg------------aagttcgttgaagaacaactc????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Onchocerca_volvulus_CAA57658.1 ???????????????????????????????????????????????????????????????????????????atgaatctgattattggcgtcgcaggtcgcttattggttggcaagaactattgtctgaatacacaacga------ctaaaacatgttcttcctgatttaccatacgattatggagccttggagccgata---ttgtcggccgaaattatgcaagttcatcacggtaaacatcatgctgcatatgtaaatgctcttaatcaagccgaagagaaagtaaaagaagcgctagca---------------------aaaggagatacacaggctgctgttgctggcacaaaa---------------------------ttaatgaatttcaacactggcggacacattaatcatacactgttctgggaaggattaactgccgta------aagaatagcggagaaccgaattct---------gaattaatgacggctataaagaaggatttcgggtctttggaaacgatgatagataagttaaatgctaaaacaattgcgatccaaggttccggatggggatggcttgcttatgacaag---------------------------------------------gaaatg------aaacgtttgcaacttgcttgttgtcccaaccaagat---cttcttgagccaacaacaggt------------ctaattccactattttgcatcgatgtctgggaacatgcttattatctgcagtataaaaatttacggccagatttcgtgaaagctatttggaaa---attgcgaattggaaaataatcagtgatcgctacattaaagctagagga?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Candida_sp_CAA72335.1 ?????????????????????????????????????????????atgctt------------tcttctgctatcaagagatccgccgtcggtattgctagacgttccgtcgtgtcttcttccgttgga------gccgtcaga------accaaagtatcgttaccagacttggattgggacttcggagccttggagcctcac---atttcgggacagatcaacgaaatccactacaccaagcaccaccaaacttacgttaacggttacaaccaagccattgagcaagcagccaggccaagg------------------------caaggggaggtcaagaagaccattgaattgcaaaag---------------------------gccatcaacttccacggtggtggatacaccaaccactgtttgttctggaagaacttggctccagagaag---caaggaggtggtgagccacctgctgaagactctgagtttgccaagagaatcgttgagcaatacggctccctcgacaacttgaaggctatcaccaacggtaagttggccggtatccaaggttctggttgggctttcattgtcaagaacaag---------------------------------------------gaaaac---ggtggtgctttagatgttatcactactgcaaaccaagat---actgttcttggacca------------------tttgttccattggttgctattgatgcttgggaacatgcctactacttgcaataccagaacgtcaaggctgactacttcaaggccatctggaac---gttatcaactggaaggaagccgagaagagatacttgatcaac???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Caenorhabditis_elegans_CAB02913.1 ???????????????????????????????????????????????????????????????????????????atgcttcaaaacaccgttcgctgtgtctcaaagcttgttcaaccgatcacaggagtcgctgctgttcgc------tcgaagcactcgctgccagatttaccatacgactatgctgatttggagcctgta---atcagtcacgagattatgcaacttcatcatcaaaagcatcatgccacttatgtgaacaatctcaaccaaattgaggaaaagcttcacgaggcggtctcc---------------------aaaggaaacgtcaaagaagctatcgctcttcagcca---------------------------gctctcaagttcaatggaggaggacatatcaaccactccatcttctggactaatttggca------------aaggacggaggagaaccatcggcg---------gagttgctcaccgcaattaagagcgacttcggatctctggataatcttcaaaaacagctttcggcatcaactgtcgctgttcaaggatcaggatggggatggttgggatactgtcca---------------------------------------------aaggga------aagatcttgaaggttgccacatgtgccaatcaggat---ccacttgaggcaacaactgga------------cttgttccactgttcggaattgacgtctgggagcacgcttactacttgcagtacaagaatgttcgaccagattatgtcaatgctatttggaag---atcgccaactggaagaacgtcagcgagcgttttgcaaaggcacagcaa?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Arabidopsis_thaliana_CAB87434.1 ???????????????????????????????????????????????????atgacgaccaccgttattatcattatcttcgttgccatcttcgctacgactcttcacgacgccagaggagcaaccatggaaccgtgtctcgaatcaatgaagactgcttcgcttcctgatcttccgtatgcttatgatgcgctagagccagca---atcagtgaggagatcatgcggctacaccatcagaaacaccaccagacttatgtcactcagtacaacaaagccctcaacagccttcgttctgccatggct---------------------gacggtgatcactcctccgtcgtcaaactccaaagc---------------------------ctcatcaagttcaacggcggagggcacgttaaccatgcaatcttctggaaaaacctagccccggttcat---gaaggaggtggcaaaccaccgcat------gatcctttggcttcggcgatcgatgctcatttcggatcactagaaggattgatccaaaaaatgaacgcggaaggcgctgctgtacagggatctggatgggtgtggtttggattagacaga---------------------------------------------gagctt------aagagacttgtcgttgaaaccacagccaaccaggat---ccattggtgactaagggatcacac---------ctagttcctctaattgggattgacgtgtgggagcatgcctactatccacagtacaagaatgcaagagcggagtacttgaagaacatatggact---gtaatcaactggaaatatgcagcggacgtcttcgagaagcacactcgtgatctt------gatattaac????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; end; begin assumptions; wtset MySoapWeights (VECTOR) = 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.743 0.714 0.714 0.714 0.714 0.714 0.714 0.714 0.714 0.714 0.543 0.543 0.543 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.257 0.257 0.257 0.257 0.257 0.257 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.29 0.29 0.29 0.29 0.29 0.29 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.171 0.486 0.486 0.486 0.943 0.943 0.943 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.29 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.629 0.629 0.629 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 0.714 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.714 0.714 0.714 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.571 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.857 0.857 0.857 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.143 0.143 0.143 0.143 0.143 0.143 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 0.714 0.429 0.429 0.429 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 0.143 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.371 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.543 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.429 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.343 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.114 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.486 0.971 0.971 0.971 0.971 0.971 0.971 0.971 0.971 0.971 0.971 0.971 0.971 1 1 1; end; begin trees; tree Mn_Fe_superoxide_dismutase = (((((Penicillium_chrysogenum_AAC36585.1:0.34051,Neurospora_crassa_AAD28503.1:0.27339):0.26409[1],(Schizosaccharomyces_pombe_AAF19051.1:0.36196,Pneumocystis_carinii_AAC24764.1:0.71151):0.12214[0.943]):0.06412[0.513],(Candida_albicans_AAB86583.1:0.24934,(Candida_sp_CAA72335.1:0.18954,Saccharomyces_cerevisiae_AAB68939.1:0.32136):0.07268[0.61]):0.25434[1]):0.08564[0.791],((Arabidopsis_thaliana_CAB87434.1:0.31765,Arabidopsis_thaliana_AAF01529.1:0.21348):0.27524[1],(Drosophila_melanogaster_AAF57955.1:0.35616,((Onchocerca_volvulus_CAA57658.1:0.50902,(Caenorhabditis_elegans_CAB02913.1:0.15628,Caenorhabditis_elegans_AAB53822.1:0.11313):0.15295[1]):0.11584[0.994],(Rattus_norvegicus_CAA39937.1:0.03387,Mus_musculus_AAB60902.1:0.02684):0.23219[1]):0.08725[0.873]):0.14599[1]):0.10103[0.724]):0.21049[1],(((Toxoplasma_gondii_AAC63943.1:0.21401,(Babesia_bovis_AAB69755.1:0.3377,Entamoeba_histolytica_CAA50204.1:0.47354):0.08578[0.743]):0.09059[0.924],Trypanosoma_cruzi_AAB39949.1:0.35308):0.14755[1],((Trichomonas_vaginalis_AAC48291.1:0.12536,(Tritrichomonas_foetus_AAC47735.1:0.1604,Tritrichomonas_foetus_AAC47734.1:0.09764):0.20185[1]):0.38885[1],(Chlamydomonas_reinhardtii_AAB04944.1:0.28584,((Arabidopsis_thaliana_BAA97372.1:0.29163,Oryza_sativa_BAA92737.1:0.56464):0.13153[0.967],Arabidopsis_thaliana_BAB11186.1:0.43387):0.21097[1]):0.12537[0.998]):0.09524[0.633]):0.25459[1],Escherichia_coli_CAA27580.1:0.39688); end;