#NEXUS
begin taxa;
	dimensions ntax=27;
	taxlabels
	Chlamydomonas_reinhardtii_AAB04944.1	Trypanosoma_cruzi_AAB39949.1	Caenorhabditis_elegans_AAB53822.1	Mus_musculus_AAB60902.1	Saccharomyces_cerevisiae_AAB68939.1	Babesia_bovis_AAB69755.1	Candida_albicans_AAB86583.1	Pneumocystis_carinii_AAC24764.1	Penicillium_chrysogenum_AAC36585.1	Tritrichomonas_foetus_AAC47734.1	Tritrichomonas_foetus_AAC47735.1	Trichomonas_vaginalis_AAC48291.1	Toxoplasma_gondii_AAC63943.1	Neurospora_crassa_AAD28503.1	Arabidopsis_thaliana_AAF01529.1	Schizosaccharomyces_pombe_AAF19051.1	Drosophila_melanogaster_AAF57955.1	Oryza_sativa_BAA92737.1	Arabidopsis_thaliana_BAA97372.1	Arabidopsis_thaliana_BAB11186.1	Escherichia_coli_CAA27580.1	Rattus_norvegicus_CAA39937.1	Entamoeba_histolytica_CAA50204.1	Onchocerca_volvulus_CAA57658.1	Candida_sp_CAA72335.1	Caenorhabditis_elegans_CAB02913.1	Arabidopsis_thaliana_CAB87434.1;
end;

begin characters;
	dimensions nchar=31;
	format datatype=standard missing=? gap=-;
	charlabels
	24-1	31-0	33-2	37-0	41-2	42-2	43-2	63-0	64-0	77-0	92-1	111-1	116-1	138-1	139-0	155-0	162-1	173-0	199-0	202-1	233-0	235-0	243-1	250-0	255-0	259-0	262-1	265-0	267-0	275-1	280-0;
	matrix
Chlamydomonas_reinhardtii_AAB04944.1	0000000000000000000000000000000
Trypanosoma_cruzi_AAB39949.1	0000000000000000000000000000000
Caenorhabditis_elegans_AAB53822.1	0000001000010000010000000000001
Mus_musculus_AAB60902.1	0010000000010000100000100000000
Saccharomyces_cerevisiae_AAB68939.1	0000000000000000000000000000000
Babesia_bovis_AAB69755.1	0000000000101000000000000000010
Candida_albicans_AAB86583.1	0000000000000000000000000000000
Pneumocystis_carinii_AAC24764.1	0000000011000100000010001010001
Penicillium_chrysogenum_AAC36585.1	0000000010000000000000000001000
Tritrichomonas_foetus_AAC47734.1	0000000000000000000000000000000
Tritrichomonas_foetus_AAC47735.1	0000000000000000000000000000000
Trichomonas_vaginalis_AAC48291.1	0000000000000000000000000000000
Toxoplasma_gondii_AAC63943.1	0000000000101000000000000000010
Neurospora_crassa_AAD28503.1	0000000010000000000000000001000
Arabidopsis_thaliana_AAF01529.1	0000000000000101001001000001000
Schizosaccharomyces_pombe_AAF19051.1	0000000010000000000000000000000
Drosophila_melanogaster_AAF57955.1	0000010000000000000000000000000
Oryza_sativa_BAA92737.1	0000000100000010000100000100100
Arabidopsis_thaliana_BAA97372.1	1001000100000010000100010100100
Arabidopsis_thaliana_BAB11186.1	0100000100000010000100010100100
Escherichia_coli_CAA27580.1	0000000000000000000000000000000
Rattus_norvegicus_CAA39937.1	0010000000010000100000100000000
Entamoeba_histolytica_CAA50204.1	0000000000000000000000000000000
Onchocerca_volvulus_CAA57658.1	0000100000010000100000100000000
Candida_sp_CAA72335.1	0000000000000000000000000000000
Caenorhabditis_elegans_CAB02913.1	0000001000010000010000000000001
Arabidopsis_thaliana_CAB87434.1	0000000000000101001001000001000
;
end;

begin assumptions;
	wtset MySoapWeights (VECTOR) =  0.86 0.86 0.86 0.86 0.86 0.86 0.86 1 1 1 1 0.86 0.86 1 1 0.543 0.429 1 1 0.143 1 1 0.143 1 1 1 1 1 1 1 1;
end;

begin trees;
	tree Mn_Fe_superoxide_dismutase = (((((Penicillium_chrysogenum_AAC36585.1:0.34051,Neurospora_crassa_AAD28503.1:0.27339):0.26409[1],(Schizosaccharomyces_pombe_AAF19051.1:0.36196,Pneumocystis_carinii_AAC24764.1:0.71151):0.12214[0.943]):0.06412[0.513],(Candida_albicans_AAB86583.1:0.24934,(Candida_sp_CAA72335.1:0.18954,Saccharomyces_cerevisiae_AAB68939.1:0.32136):0.07268[0.61]):0.25434[1]):0.08564[0.791],((Arabidopsis_thaliana_CAB87434.1:0.31765,Arabidopsis_thaliana_AAF01529.1:0.21348):0.27524[1],(Drosophila_melanogaster_AAF57955.1:0.35616,((Onchocerca_volvulus_CAA57658.1:0.50902,(Caenorhabditis_elegans_CAB02913.1:0.15628,Caenorhabditis_elegans_AAB53822.1:0.11313):0.15295[1]):0.11584[0.994],(Rattus_norvegicus_CAA39937.1:0.03387,Mus_musculus_AAB60902.1:0.02684):0.23219[1]):0.08725[0.873]):0.14599[1]):0.10103[0.724]):0.21049[1],(((Toxoplasma_gondii_AAC63943.1:0.21401,(Babesia_bovis_AAB69755.1:0.3377,Entamoeba_histolytica_CAA50204.1:0.47354):0.08578[0.743]):0.09059[0.924],Trypanosoma_cruzi_AAB39949.1:0.35308):0.14755[1],((Trichomonas_vaginalis_AAC48291.1:0.12536,(Tritrichomonas_foetus_AAC47735.1:0.1604,Tritrichomonas_foetus_AAC47734.1:0.09764):0.20185[1]):0.38885[1],(Chlamydomonas_reinhardtii_AAB04944.1:0.28584,((Arabidopsis_thaliana_BAA97372.1:0.29163,Oryza_sativa_BAA92737.1:0.56464):0.13153[0.967],Arabidopsis_thaliana_BAB11186.1:0.43387):0.21097[1]):0.12537[0.998]):0.09524[0.633]):0.25459[1],Escherichia_coli_CAA27580.1:0.39688);
end;